2334 days ago
Jabba: Hybrid Error Correction for Long Sequencing Reads
...e corrected (e.g. PacBio reads). The corrections will be written to a file Jabba fasta.The output is a file in fasta format with corrections of the long reads, and additionally a fil...1980 days ago
ECTOOLS: Long Read Correction and other Correction tools
Long Read Correction and other Correction tools This package is a loose collection...takes as input the unitigs from a short read assembly and uses them to correct long read data. More background in...2311 days ago
LRCstats: Long Read Correction Statistics
...pipeline for benchmarking DNA long read correction algorithms for long reads outputted by third gene...ogy, as the name suggests, are longer in length than reads produc...issues in downstream analysis. Long read correction algorithms re...ad correction algorithms using long reads produced by simulators...2311 days ago
mojolicious: a next generation web framework for the Perl programming language.
...b framework. Full stack HTTP and WebSocket client/server implementation with IPv6, TLS, SNI, IDNA, HTTP/SOCKS5 proxy, UNIX domain socket, Comet (long polling), Promises/A+, keep-a...2303 days ago
HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution
Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution" Preprint: http://biorxiv.org/content/early/2016/08/01/062117 Paper: http://ge...2278 days ago
NGMLR: long-read mapper designed to align PacBio or Oxford Nanopore
CoNvex Gap-cost alignMents for Long Reads (ngmlr) is a long-read mapper designed to sensitively align PacBilo or Oxford Nanop...mlr uses a convex gap cost model that penalizes gap extensions for longer gaps less than for shorter...2201 days ago
Flye: Fast and accurate de novo assembler for single molecule sequencing reads
Flye is a de novo assembler for long and noisy reads, such as those produced by PacBio and Oxford Nanopore Technologies. The algorithm uses an A-Bruijn graph to find the overlaps bet...2191 days ago
2191 days ago
Ranbow: a haplotype assembler for polyploid genomes
.... Ranbow has three main modes of function: ranbow hap: for haplotyping ranbow eval: for evaluating of the assemble haplotypes by gold standard (long) reads ranbow phylo: for th...2164 days ago