Structural variation: the hidden genomic treasure
...a by paired-end mapping Link TIGER, transduction inference in germline genomes using short read data Link MANTA https://github.com/Illumina/manta SV-Bay https://github.c...2724 days ago
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List of Bioinformatics Software Tools for Next Generation Sequencing
...ut sequencing datasets; calls variants found in <.05% of the population Input: BAM file input→ suggest running through GATK Output: Manta Description: Calls indels...2930 days ago
Tags: Manta, rapid, detection, structural, variants, indels, germline, cancer, sequencing, applications
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Comment on "List of non-commercial NGS genotype-calling software"
...[ paper-2012 ] lumpy – lumpy: a general probabilistic framework for structural variant discovery. [ paper-2014 ] manta – Structural varia...1164 days ago