Results for "Map"
Bookmarks
...udes a bash script wrapper that calls aligner in case one needs to first map reads to contigs (instead of...y where ScaffMatch files are stored. These are .sam files produced after mapping reads to contigs and the...2700 days ago
Many-Core Engine (MCE) for Perl example
...iterators for preserving output order. MCE::Mutex Provides a simple semaphore implementation supporting...parallel grep implementation similar to the native grep function. MCE::Map Provides a parallel map mode...2651 days ago
- Our basic strategy in building homology maps is to use exons that are orthologous in multiple genomes as map "anchors." Given K genomes, the steps in the map construction are as follows:...are potential anchors to be used in the map. Starting with the largest c...
2645 days ago
Strand Life Sciences announces the release of Strand NGS v3.1 at ASHG 2017
...s, Strand NGS v3.1 includes confounding variable analysis to eliminate technical effects, including batch effects; the t-SNE plot; profile and heat-map plots of gene-body coverage;...2386 days ago
- ...uence but sometimes, a library of EST sequences is used.In either way, aligning your sequence reads to the reference sequence is called mapping. The most used mappers of DNA-seq data are ...
2560 days ago
CAR: Reconstructing Contiguous Regions of an Ancestral Genome
...this method with data from chromosome painting experiments to produce a map of an early mammalian genome...ilable human genome sequence data. The precision is further increased by mapping inversions as small as 31...2544 days ago
Genome Annotation Transfer Utility (GATU)
...train of SARS CoV. This saves researchers from tedious manual annotation of these sequences. The program utilizes tBLASTn and BLASTn algorithms to map genes from the reference geno...2533 days ago
Genetic-mapper: SVG Genetic Map Drawer
Genetic-mapper is a perl script able to draw publication-ready vectorial genetic maps. Perl script for creating a...ation-ready vectorial genetic/linkage map in Scalable Vector Graphics (...Any extra parameter will be ignored. map.tsv ID<tab>LG<tab...2513 days ago
ONT assembly and Illumina polishing pipeline
This pipeline performs the following steps: Assembly of nanopore reads using Canu. Polish canu contigs using racon (optional). Map a paired-end Illumina dataset...2355 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
.... It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an asse...terial data sets. Including the mapping step, it takes about 3 mi...on. It also shows that minimap can be used as a read ov...d.fastq reads.fq # Install minimap and miniasm (requiring gcc an...2351 days ago
