BOL: ONT assembly and Illumina polishing pipeline

X

BOL wishing you a very and Happy New year

Alternative content

Bookmarks
Jit
ONT assembly and Illumina polishing pipeline

ONT assembly and Illumina polishing pipeline

By Jit 2585 days ago

https://github.com/nanoporetech/ont-assembly-polish

This pipeline performs the following steps:

Assembly of nanopore reads using Canu.
Polish canu contigs using racon (optional).
Map a paired-end Illumina dataset onto the contigs obtained in the previous steps using BWA mem.
Perform correction of contigs using pilon and the Illumina dataset.