Results for "Match"
Top-level pages
List of In-silico Binding Site Prediction Tools
...extract site-specific spatial patterns of split pockets as templates to match those from unbound structures...to screen the Protein Data Bank (PDB) for finding ligand binding sites matching your protein structure or...3743 days ago
Perl one-liner for bioinformatician !!!
...in a fileperl -pe '$_ = ++$a." $_" if /regex/' #Number only lines that match a patternperl -ne 'print ++$a." $_" if /regex/' #Number and print only lines that match a patternperl -ne 'printf "%-...3628 days ago
- ...ce genome. The mapping occurs because the sequences within the raw read match or align to sequences within...he reference genome. Three core abbreviations are used: M for alignment match; I for insertion; and D for D...
2868 days ago
Perl Special Vars Quick Reference
...xp parenthetical capture holders. $& Last successful match (degrades performance). ${^MATCH} Similar to $& ... /p modifier. $' Postmatch for last successful match string (degrades performance)...2644 days ago
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
BBSplit internally uses BBMap to map reads to multiple genomes at once, and determine which genome they match best. This is different than with ordinary mapping. If a genome (say, hu...2314 days ago
PerlOneLiner for Bioinformatician
...if /./' # Number only lines that match a pattern, print others unmod...# Number and print only lines that match a patternperl -ne 'print ++$a...nt the total number of fields that match a patternperl -alne 'map { /r...ce) "foo" with "bar" on lines that match "baz"perl -pe '/baz/ &&am...2302 days ago
Awk for Bioinformatician and computational biologist
...r more files to see if they contain lines that match with the specified patterns a...put files one line at a time.For each line, it matches with given pattern in the g...action is not given, print all that lines that matches with the given patterns whi...2279 days ago
Computational resources for TE discovery and TE detection
...ww.repeatmasker.org/ RepeatRunner http://www.yandell-lab.org/repeat_runner/index.html RepeatScout http://repeatscout.bioprojects.org/ repeat-match http://mummer.sourceforge.net...2273 days ago
