Commercial and public next-gen-seq (NGS) software
...SAKE) is a genomics application for aggressively assembling millions of short nucleotide sequences by progressively searching for perfect 3'-most k-mers using a DNA prefix tree. Auth...3532 days ago
Software packages for next gen sequence analysis
...SAKE) is a genomics application for aggressively assembling millions of short nucleotide sequences by progressively searching for perfect 3'-most k-mers using a DNA prefix tree. Auth...3256 days ago
Genome Assembly Tools and Software - PART1 !!
...counting. Then we find frequent k-mers whose frequencies are over ce...We then assemble these frequent k-mers into consensus repeats (in th...s the number of distinct genomic k-mers in the dataset, and returns t...mina reads, optionally with PCR primers embedded in the sequence, and...2699 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...ts using RNA-seq data (uses k-mers) https://combine-lab.github....transcript clusters; uses sig-mers, a special type of k-mer...c mutations; algorithm uses k-mers and is based on colored de Br...rrector for Illumina reads using k-mers Software (C++) https://gith...2384 days ago