FSA: Fast Statistical Alignment
...based phylogenetic reconstruction methods like Neighbor-Joining build...wartz in "Posterior Decoding Methods for Optimization and Control...ces. FSA introduces several novel methods for constructing better alig...ent between the anchors using the methods described above. The includ...2637 days ago
fineSTRUCTURE v2 & GLOBETROTTER
...esults when the GUI is unavailable. GLOBETROTTER, the admixture dating method based on ChromoPainter. Downl...hat this page is This page provides information about and downloads for methodology for Chromosome Painting....2630 days ago
2627 days ago
ConPADE: Genome Assembly Ploidy Estimation from Next-Generation Sequencing Data
...and Allele Dosage Estimation), a probabilistic method that estimates the ploidy of...t findings regarding errors in sequencing. The method can be used for whole genome...cing data. They also show applicability of the method for variant calling and allel...2619 days ago
Enrichr: a comprehensive gene set enrichment analysis
Enrichment analysis is a popular method for analyzing gene sets generated by genome-wide experiments. Here we present a significant update to one of the tools in this domain called En...2557 days ago
CAR: Reconstructing Contiguous Regions of an Ancestral Genome
We describe a new method for predicting the ancestral order and orientat...odern species. We combine the results from this method with data from chromosome pai...highly accurate in the foreseeable future. Our methods were developed as part of a...2536 days ago
AVID: A Global Alignment Program
A new global alignment method called AVID. The method is designed to be fast, memory efficient, a...ng. We present numerous applications of the method, ranging from the comparison...at for the representation of alignments and methods for their comparison. These...2530 days ago
DarkHorse: a method for genome-wide prediction of horizontal gene transfer
...and ranking of horizontal transfer candidate proteins is presented. The method is quantitative, reproducible...enetic tree-building procedures to improve accuracy and efficiency. The method is also useful for retrospect...2501 days ago
2350 days ago
Oxford Nanopore Sequencing, Hybrid Error Correction, and de novo Assembly of a Eukaryotic Genome
...gress of DNA molecules through a membrane pore has been postulated as a method for sequencing DNA for severa...0kbp) at such high error rate (between ~5 and 40% error). With this new method we were able to perform a hyb...2341 days ago