List of Bioinformatics Software Tools for Next Generation Sequencing
...pattern: ...” RADIA Description: RNA and DNA Integrated Analysis for Somatic Mutation Detection; DNA only Method(tumor/normal pair, ignores RNA) or Triple BAM Method (uses all three datasets from...2906 days ago
2866 days ago
Genome Assembly Tools and Software - PART1 !!
...nscriptomes using reference based method. It applies an align-layout-c...y challenging. We present a novel method for targeting assembly of spe...ds A fast and memory-efficient method for haplotype assembly from l...g Overlapped Pair-End reads) is a method to align and connect the illu...2683 days ago
2486 days ago
Single Cell RNAseq data analysis tutorial !!
...ar Inference of Cellular Expression Relationships (SLICER) algorithm for inferring cell trajectories https://github.com/jw156605/SLICER SinQC: A Method and Tool to Control Single-ce...2348 days ago
Protein-Protein Interaction Sites Predictions !
...: Protein-Protein Interaction Sites PPISP A consensus neural network method for predicting protein-protei...ing soft metal binding sites in proteins DBD-Hunter A knowledge-based method for the prediction of DNA-pro...2200 days ago
Ligand Docking Tools and Software !
...ing site and the ligand to be investigated, and the determination which method would be more suitable in a s...ecific context is difficult. We encouraged you to check several docking methods to determine which one(s) wo...2200 days ago
Tools for Protein-Protein Docking !
...active field of research. You first should analyzed your proteins in order to define their conformational space and then choose the most suitable method for your docking problem....2200 days ago
Ancestral sequence reconstruction steps !
...dash; is a technique used in the study of molecular evolution. The method consists of the synthesis of...nt of algorithms and of better sequencing and synthesis techniques, the method was developed further in the...2176 days ago
List of non-commercial NGS genotype-calling software
...and genotypes. Recently developed statistical methods both improve and quantify th...ware for SNP and genotype calling, including a method for generating candidate SNPs...ware for SNP and genotype calling, including a method (GPT_Freq) for generating can...2094 days ago