Bokeh: An interactive visualization library that targets modern web browsers for presentation
Bokeh is an interactive visualization library that targets modern web browsers for presentation. Its goal is to provide elegant, concise construction of versatile graphics, and to ext...2092 days ago
2067 days ago
Referee: Genome assembly quality scores
Modern genome sequencing technologies provide a succint measure of quality at each position in every read, however all of this information is lost in the assembly proce...2007 days ago
visNetwork: an R package for network visualization, using vis.js javascript library
...p;vis.js API, and even more with special features for R : easy to use custom shapes, styles, colors, sizes, … works smooth on any modern browser for up to a few thous...1941 days ago
Shouji: a fast and efficient pre-alignment filter for sequence alignment
...y detecting all common subsequences shared between two given sequences. The second key idea is to design a hardware accelerator design that adopts modern FPGA (field-programmable gate...1642 days ago
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HS3D: Homo Sapiens Splice Sites Dataset
...mpone (2002). HS3D, a Dataset of Homo Sapiens Splice Regions, and its Extraction Procedure from a Major Public Database , International Journal of Modern Physics C, 13(8), 1105-1117....1421 days ago
The wavefront alignment (WFA) algorithm
...score s, using O(s^2) memory. Moreover, the WFA exhibits simple data dependencies that can be easily vectorized, even by the automatic features of modern compilers, for different arch...1405 days ago
PyParanoid: a pipeline for rapid identification of homologous gene families in a set of genomes
...homology. However, these methods are computationally expensive, requiring O(n2) resources to identify RBHs. This is problematic, as the modern deluge of sequencing data mea...1359 days ago