2910 days ago
OPERA : Optimal Paired-End Read Assembler
...footprint). We therefore encourage you to download and use our latest version: OPERA-LG. In our benchmarks, it has significantly improved corrected N50 and reduced the number of sca...2788 days ago
2788 days ago
MyPro: A seamless pipeline for automated prokaryotic genome assembly and annotation
...can be obtained with ease. It performed better than de novo assemblers and contig integration software. Produces more contiguous assemblies, higher N50 values and lower number of co...2691 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
...ping, in ~10 minutes with 16 CPUs. The total assembly size is 105Mb; the N50 is 1.94Mb. In comparison, the HGAP3produces a 104Mb assembly with N50 1.61Mb. This dotter plot...2344 days ago
Oxford Nanopore Sequencing, Hybrid Error Correction, and de novo Assembly of a Eukaryotic Genome
...r correction of the nanopore reads using complementary MiSeq data and produce a de novo assembly that is highly contiguous and accurate: the contig N50 length is more than ten-times...2342 days ago
COPE: an accurate k-mer-based pair-end reads connection tool to facilitate genome assembly
...When COPE is applied to real reads for genome assembly, the resulting contigs are found to have fewer errors and give a 14-fold improvement in the N50 measurement when compared wit...2335 days ago
Genome assembly stats plotting
...ed b y a number of metrics, including: Overall assembly length Number of scaffolds/contigs Length of longest scaffold/contig Scaffold/contig N50 and N90Assembly base composit...2251 days ago
TRITEX sequence assembly pipeline for Triticeae genomes
...notypes of barley (Hordeum vulgare), tetraploid wheat (Triticum turgidum) and hexaploid wheat (T. aestivum) with reasonable results: super-scaffold N50 values in the range of dozens...1713 days ago
CSA: A high-throughput chromosome-scale assembly pipeline for vertebrate genomes
...diverged (~65-100 Mya) reference genomes for ordering the contigs and thus support the assembly process. This typically results in improved contig N50 when compared to current stat...1145 days ago