Results for "NGOPT Assembler"
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PAired-eND Assembler for DNA sequences
PANDASEQ is a program to align Illumina reads, optionally with PCR primers embedded in the sequence, and reconstruct an overlapping sequence. More at https://github.com/neufeld/pandaseq2946 days ago
- MIRA is a multi-pass DNA sequence data assembler/mapper for whole genome and EST/RNASeq projects. MIRA assembles/map...actually putting too much manual work into it. More at http://mira-assembler.sourceforge.net/docs/Definiti...
2946 days ago
- DISCOVAR is a new variant caller and DISCOVAR de novo a new genome assembler, both designed for state-of-the-art data....
2934 days ago
- SPAdes – St. Petersburg genome assembler – is intended for both standard isolates and single-cell MDA bacteria assemblies. This manual will help you to install and run SPAdes....
2933 days ago
CANU: Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing.
Canu is a fork of the Celera Assembler designed for high-noise single-molecule sequencing (such as the PacBio RSII or Oxford Nanopore MinION). The software is currently alpha l...2909 days ago
- Platanus is a novel de novo sequence assembler that can reconstruct genomic sequences of highly heterozygous diploids from massively parallel shotgun sequencing data. The latest version i...
2909 days ago
- _A5-miseq_ is a pipeline for assembling DNA sequence dat...mbling homozygous haploid genomes. Use a different assembler for metagenomes and heterozyg...us diploid or polyploid organisms. Use a different assembler if a tool like FastQC reports...
2812 days ago
- Scarpa is a stand-alone scaffolding tool for NGS data. It can be used together with virtually any genome assembler and any NGS read mapper that...
2848 days ago
VAGUE:Velvet Assembler Graphical Front End
VAGUE is a vague acronym for "Velvet Assembler Graphical Front End", which means it is a GUI for the Velvet de novo assembler. The command line version of...2622 days ago
- KisSplice is a software that enables to analyse RNA-seq...ference genome. It is an exact local transcriptome assembler that allows to identify SNPs,...ads. KisSplice is not a full-length transcriptome assembler. This means that it will outp...
2814 days ago
