GARM:Genome Assembly, Reconciliation and Merging
The pipeline is based mainly implemented using Perl scripts and modules and third-party open source software like the AMOS (Myers et al., 2000) and MUMmer (Kurtz et al., 2004) packages. The pipeline was tested on Debian, Ubuntu, Fedora and BioLinux distributions. The method merges contigs or scaf...Tags: Bioinformatics, Analysis, Assembly, Genome, NGS, Merge, GARM
2705 days ago
MeGAMerge: A tool to merge assembled contigs, long reads from metagenomic sequencing runs
MeGAMerge MeGAMerge (A tool to merge assembled contigs, long reads from metagenomic sequencing runs) Description MeGAMerge is a perl based wrapper/tool that can accept any number of sequence (FASTA) files containing assembled contigs of any length in Multi-FASTA format to produce an improved c...Tags: Bioinformatics, Analysis, Assembly, Genome, NGS, Merge, MeGAMerge
2704 days ago
Tags: Bioinformatics, Analysis, Assembly, Genome, NGS, QuickMerge
2704 days ago
Tags: Bioinformatics, Chromosome, Genome, NGS, Align, Compare, Similarity
2704 days ago
Tags: Bioinformatics, Chromosome, Genome, NGS, Align, Compare, Similarity, Scaffolding
2704 days ago
Tags: Bioinformatics, Analysis, NGS, Genome, Synteny, Homology, MCscan
2702 days ago
Tags: Bioinformatics, Analysis, NGS, Online, GKNO
2676 days ago
Tags: Bioinformatics, Alignment, NGS, Reads, YAHA
2673 days ago
Tags: Bioinformatics, Alignment, NGS, Reads, SpeedSeq
2673 days ago
Tags: Bioinformatics, Assembly, PANDASEQ, Genome, NGS, Illumina
2670 days ago