Tags: Bioinformatics, NGS, Sequence, Samtools, Primer, Tutorial
2867 days ago
Tags: Bioinformatics, NGS, Reads, Silulator, INDEL, SNPs, Simulation
2867 days ago
Tags: Bioinformatics, SAM, Flags, NGS
2861 days ago
Tags: Bioinformatics, Analysis, NGS, A5-miseq, NGOPT Assembler, Genome
2811 days ago
Tags: Bioinformatics, Analysis, Visualization, Chromatin, NGS, HiC
2863 days ago
Kraken: ultrafast metagenomic sequence classification using exact alignments
Kraken is an ultrafast and highly accurate program for assigning taxonomic labels to metagenomic DNA sequences. Previous programs designed for this task have been relatively slow and computationally expensive, forcing researchers to use faster abundance estimation programs, which only classify sm...Tags: Bioinformatics, Kraken, Metagenomic, Sequence, Classification, Alignments, NGS
2863 days ago
Tags: Bioinformatics, Kaiju, Metagenomic, Sequence, Classification, Alignments, NGS
2863 days ago
Tags: Bioinformatics, 4DGenome, Database, Computational, Predicted, Interactions, Chromosome, Genome, NGS
2856 days ago
Bioinformatics tools and software
USEARCH >Extreme high-throughput sequence analysis. Orders of magnitude faster than BLAST. MUSCLE >Multiple sequence alignment. Faster and more accurate than CLUSTALW. UPARSE >OTU clustering for 16S and other marker genes. Highly accurate OTU sequences and improved diversity ...Tags: Bioinformatics, Analysis, Visualization, NGS, Tools, Software
2855 days ago
Fancy Oneliner for Bioinformatics !!
This webpage lists some of the one-liners that we frequently use in metagenomic analyses. You can click on the following links to browse through different topics. You can copy/paste the commands as they are in your terminal screen, provided you follow the same naming conventions and folder struct...Tags: Bioinformatics, Analysis, Visualization, SAM, BAM, Oneliner, NGS, metagenomics
2853 days ago