2980 days ago
RNA-Seq De novo Assembly Using Trinity
Trinity, developed at the Broad Institute and the Hebrew Univers...f transcriptomes from RNA-seq data. Trinity combines three indep...inity partitions the sequence data into many individual de Bruij...nchworm assembles the RNA-seq data into the unique sequences of...directory. Assemble RNA-Seq data lik...2978 days ago
2941 days ago
2964 days ago
RACA: Reference-Assisted Chromosome Assembly
Rreference-Assisted Chromosome Assembly (RACA), an algorithm to reliably order and orient sequence scaffolds generated by NGS and...2964 days ago
Trimmomatic: A flexible read trimming tool for Illumina NGS data
Paired End: java -jar trimmomatic-0.35.jar PE -phred33 input_forward.fq.gz input_reverse.fq.gz output_forward_paired.fq.gz output_forward_unpaired.fq.gz output_reverse_...2955 days ago
2952 days ago
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2944 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
...alignment files Visualizing data in a genome browser RNA-Se...pt discovery and differential analysis with Cufflinks Differential...A-Seq) Microarray Basic analysis of Affymetrix Gene Expression...conductor General Tips for Data Analysis Excel workarounds, ad...2944 days ago