Results for "NGS data analysis"
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Cytoscape is an open source software platform for visualizing complex networks and integrating these with any type of attribute data. A lot of Apps are available for various kinds of problem domains, including bioinformatics, social network analysis, and semantic web.2917 days ago
- Database to Database Conversions db2db allows for conversions of identifiers from one database to other database identifiers or annotations. To use db2db select the input type of your data, ch...
2907 days ago
- methylKit is an R package for DNA methylation analysis and annotation from high-throughput bis...package is designed to deal with sequencing data from RRBS and its variants, b...ethylKit can deal with base-pair resolution data for 5hmC obtained from Tab-seq or...
2906 days ago
- Tools for making blobplots or Taxo...he contents of genome assembly data sets as a QC step Blaxter La...he contents of genome assembly data sets as a QC step. This repo...of high-throughput sequencing data). It contains bash/perl/R scripts for running the analysis presented in the paper to cre...
2896 days ago
- The Genome Assembly Evalua...rting (GAEMR) package is an assembly analysis framework composed a number o...ingle program to generate a complete analysis report, or executed individua...mat to be entered into GAEMR’s analysis pipeline, hence enabling the...
2895 days ago
- Blobsplorer is a tool for interactive visualization of assembled DNA sequence data ("contigs") derived from (often unintentionally) mixed-species poo...bsplorer is unlikely to be of use on its own as it requires contig data to...
2895 days ago
CNIDARIA: fast, reference-free phylogenomic clustering
Motivation: Identification of biological specimens is a major requiremen...ethods analyse unprocessed sequencing data without relying on prior know...clustering genomic and transcriptomic data with no limitation on ge-nome...plementary information: Supplementary data are...2893 days ago
- In a nutshell Anvi’o is an analysis and visualization platform for ‘omics data. Please find the methods paper here: https:/...owledgements section of our methods paper An analysis and visualization platform for 'omics data http://merenlab.org/projects...
2893 days ago
- statistical analysis and visulization of functional profiles for genes and gene clustersBioconductor version: Release (3.3)This package implements methods to analyze and visua...
2893 days ago
- Horizontal gene transfer (HGT), the transfer of genetic material between organisms, i...existing HGT detection tools using a larger strain data set. When combined with addi...es our new algorithm provides richer picture and brings us c...
2887 days ago
