Results for "Next Generation Sequence Analysis"
Top-level pages
List of visualization tools for network biology
...om/articles/sections/networks-analysis. Following are the list of...icient integrated multi-level analysis of microarray, sequence, regulatory and other data h...Igraph Collection of network analysis tools with the emphasis on ef...Automatic reconstruction and analysis of biological networks and Pe...2296 days ago
List of visualization tools for genome alignments
...lt drafts. Its integration in analysis pipelines allows the optimizati...ls, which could be useful for analysis and interpretation of re...that allows visualization of sequence features, next-generation sequencing (NGS) data and t...of similar regions in two DNA sequences. The resulting alignments ar...2292 days ago
Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals
The purpose of this cheat sheet is to introduce biologist and bioinformatician to the frequently used tools for NGS analysis as well as giving experience...2289 days ago
Awk for Bioinformatician and computational biologist
Awk is a programming language which allows easy manipulation of stru...xample,$ awk 'BEGIN{print "Header,Sequence"}...t "-------"}' data/test.tsvHeader,Sequencecontig1,ACTGTCTGTCACTGTGTTGTGA...blocks for a given line by using next keyword: $ awk '{printf $1"\t"}NR==3{print "";next}{pr...2288 days ago
Computational resources for TE discovery and TE detection
Transposable Elements (TEs) to genome structure and evolution as well as their impact...nerated increasing interest in developing new methods for their computational analysis. Following are the list of...2282 days ago
Webinar on RNA-Seq Data Analysis on 28 Feb 2018
Strand NGS is a biologist friendly NGS analysis tool that allows biologists to...ment, Differential expression analysis, Splicing events and gene fus...orts large scale RNA-Seq data analysis too. The tool also supports b...erience in molecular biology, next-generation sequencing based testing, c...2272 days ago
Python learning resources for bioinformatics and computational biologist !
Python is a general-purpose language, which means it can be used to build just about a...libraries. Professionally, Python is great for backend web development, data analysis, artificial intelligence, and...2263 days ago
Some useful Bioinformatics links
...the distance between multiple sequence alignments | Bioinformatics |...Eval: A software package for analysis of genome annotations | BMC B....gov/pmc/articles/PMC3921174/ sequence - download.tardigrades.org &g...an/Mail/view Tetra-Nucleotide Analysis (TNA) | BIOiPLUG Help center...2250 days ago
- ...0) print sum / n; }' To get sequence length for all sequences in a fasta file: awk '/^>...rint seqlen}; print ;seqlen=0;next; } { seqlen = seqlen +length($0)}...: pigz *.fastq To count all sequences in a fasta file: grep "^>...only 200 first bases from all sequences in a multifasta file (e.g. f...
2226 days ago
Tools to Predict the Impact of Missense Variants !
Prioritizing missense variants for further experimental investigation is a key challenge...Evaluation of the disease‐causing potential of DNA sequence alterations” MutationA...highly conserved amino acids within protein‐coding sequence...2211 days ago
