Results for "Next generation sequencing"
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Bambus 2.0, the second generation Bambus scaffolder available as an open source package. While most other scaffolders are closely tied to a specific assembly progra...2817 days ago
- Recent technological progress has greatly facilitated de novo genome sequencing. However, de novo a...
2809 days ago
- Redundans pipeline assists an assembly of heterozygous...embled contigs, paired-end and/or mate pairs sequencing libraries and returns&nb...to-medium size genomes flexible toward many sequencing technologies (Illumina, 454 o...
2801 days ago
OPERA : Optimal Paired-End Read Assembler
OPERA (Optimal Paired-End Read Assembler) is a sequence assembly program (http:/...script OPERA-long-read that enables scaffolding with long-reads from third-generation sequencing technologies (PacBio or Oxfor...2793 days ago
- ...cians trying to cope with large volume of next-generation sequencing (NGS) data. NGS technologies brought a dramatic shift in the world of sequencing. Merely five years back, geno...various government agencies. The tasks of sequencing and assembly were handled by...
2797 days ago
GAGE : Genome Assembly Gold-standard Evaluation
...ave organized this "bake-off" as an attempt to produce a realistic assessment of genome assembly software in a rapidly changing field of next-generation sequencing. The main results of GAGE hav...2795 days ago
- Development of cancer is driven by somatic alterations, including numerical and struc...Hybridization (CGH) or by (low-pass) whole genome sequencing...algorithm that was applied to obtain CNA profiles. Next, a tailored annotation approach for...
2152 days ago
- The MIRO (the miRNA omics) pipeline is a flexible and powerf...erall short RNA) expression using short-read deep sequencing data. In its present implemen...the analysis of reads generated with the Illumina sequencing platform. MIRO allows to prep...
2768 days ago
- Metagenomics sequencing projects collect samples of DNA from uncharact...ical diversity present in a sample. The newest sequencing technologies have simultaneously made metagenomics easier, by making the sequencing process faster, and more diff...
2762 days ago
- Visualization has played an extremely important role in the...een found in the transcriptome previously, genome sequencing did not identify a direct chr...osomal fusion between these two genes. After SMRT sequencing, Ribbon shows that there are...
2751 days ago
