GenomeRing: alignment visualization based on SuperGenome coordinates
The number of completely sequenced genomes is continuously rising, allowing for comparative analyses of genomic variation. Such analyses are often based on whole-genome a...2678 days ago
DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
DnaSP is a software package for a comprehensive analysis of DNA polymorphism data. Version 5 implements a number of new features and analytical methods allowing extensive DNA polymorp...2659 days ago
2649 days ago
2592 days ago
GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.
...lem. We compared GRASS with existing HTS scaffolders using Illumina paired reads of three bacterial genomes. Our algorithm constructs a comparable number of scaffolds, but makes fewer...2553 days ago
2520 days ago
2484 days ago
orthodotter: Synteny plots (oxford grid)
...nes where dist is the minimal distance (euclidian) between two points and min_nb_genes the minimal number of genes in a cluster to be v...2475 days ago
QuorUM: An Error Corrector for Illumina Reads
...make handling the data more complicated because they result in a large number of low-count erroneous k...equent assembly. It is designed around the novel idea of minimizing the number of distinct erroneous k-...2384 days ago
2372 days ago