Bioinformatics tools developed for Oxford Nanopore data analysis !
...different types of algorithms, such as greedy, overlap-layout-consensus (OLC), de Bruijn graph (DBG), and...of assemblers for Oxford Nanopore MinION long reads LQSDALIGNER, Celera OLC Nanocorrect, Nanopolish corre...2319 days ago
MeGAMerge: A tool to merge assembled contigs, long reads from metagenomic sequencing runs
...pt any number of sequence (FASTA) files containing assembled contigs of any length in Multi-FASTA format to produce an improved contig set based on OLC based assembly. All overlap p...2692 days ago
2489 days ago
Genome Assembly Tools and Software - PART1 !!
...ines the efficiency of the de Bruijn graph and Overlap-Layout-Consensus (OLC) approaches. MaSuRCA can asse...ch and its implementation based on an improved Overlap/Layout/Consensus (OLC) strategy incorporated with s...2684 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...que MinHash Software (Java) https://github.com/marbl/MHAP Miniasm Assembler of long noisy reads (SMRT, ONT) using the Overlap-Layout Consensus (OLC) approach without the necessi...2369 days ago
Tags: multiprocess, distributed, memory, overlap, layout, consensus, OLC, metagenome, assembler
2489 days ago
BAUM – Improving Genome Assembly by Adaptive Unique Mapping and Local Overlap-Layout-Consensus
BAUM, breaks the whole genome into regions by adaptive unique mapping; then the local OLC is used to assemble each region in parallel. BAUM can: (1) perform reference-assisted assembly based on the genome of a close species; (2) or improve the results of existing assemblies that are obtained base...Tags: BAUM, Improving, Genome, Assembly, Adaptive, Unique, Mapping, Local, Overlap-Layout-Consensus, OLC
2018 days ago