InfoGenomeR: Integrative reconstruction of cancer genome karyotypes
InfoGenomeR is the Integrative Framework for Genome Reconstruction that uses a breakpoint graph to model the connectivity amo...type information to identify the optimal breakpoint graph representing cancer genomes....1107 days ago
RNA-Seq De novo Assembly Using Trinity
Trinity, developed at the Broad Institute and...e data into many individual de Bruijn graphs, each representing the trans...ene or locus, and then processes each graph independently to extract full...ers and constructs complete de Bruijn graphs for each cluster. Each clust...2976 days ago
PhyloGrapher - Graph Visualization Tool
PhyloGrapher is a program designed to visualize...ologous genes or proteins (elements).PhyloGrapher is a drawing tool that generates custom graphs for a given set of elements....p; More at http://www.atgc.org/PhyloGrapher/PhyloGrapher_Welcome.html2961 days ago
GATB : Genome Analysis Toolbox with de-Bruijn graph
The Genome Analysis Toolbox with de-Bruijn graph (GATB) provides a set of highly efficient algorithms to analyse NGS data sets. These methods enable the analysis of data sets of any size...2939 days ago
2813 days ago
2806 days ago
2757 days ago
2757 days ago
2716 days ago
2716 days ago