Results for "Overlap Graph"
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GAM-NGS: genomic assemblies merger for next generation sequencing
GAM-NGS (Genomic Assemblies Merger for Next Generation Sequ...ough reads' alignments and stored in a weightedgraph. The merging phase is carried out with the help of this weighted graph that allows an optimal&n...2690 days ago
MeGAMerge: A tool to merge assembled contigs, long reads from metagenomic sequencing runs
MeGAMerge MeGAMerge (A tool to merge assembled contigs, long reads from metagenomic sequencing runs) Descri...rmat to produce an improved contig set based on OLC based assembly. All overlap parameters (Minimum Overl...2690 days ago
- pyScaf orders contigs from genome assemblies utilising several types of information:...ot satisfying cut-offs (--identity and --overlap) suboptimal matches (only be...of each query to reference is kept) and removing overl...
2690 days ago
- ...s were completely random sequences in a statistical sense, 'overlap-consensus-layout' method woul...ong repetitive regions, and they are hard to assemble using overlap-consensus-layout approach. De Bruijn graph-based assembly approach was o...
2689 days ago
- YAHA, a fast and flexible hash-based aligner. YAHA is as fast and accurate as BWA-SW a...that use simple heuristics to select alignments, YAHA uses a directed acyclic graph to find the optimal set of al...
2659 days ago
- PANDASEQ assembles paired-end Illumina reads into sequences, trying to correct for error...al sequence will correct any uncalled bases in the overlapping region using the complementary strand. When mismatches occur in the overl...
2656 days ago
- Our basic strategy in building homology maps is to use exon...ents being performed in protein space. Construct a graph with each vertex correspondin...e significant alignments. Identify cliques in this graph. These cliques are potential...
2642 days ago
LoRDEC: a hybrid error correction program for long, PacBio reads
LoRDEC is a program to correct sequencing errors in long reads from 3rd g...r, and even works on desktop/laptop computers. It adopts a novel graph based approach: it builds a succinct De Bruijn Graph (DBG) representing the short...2579 days ago
CABOG: Celera Assembler with Best Overlap Graph
CABOG (Celera Assembler with Best Overlap Graph) is scientific software for DNA research. CABOG has been a critical component of many genome sequencing projects. CABOG operates on s...2544 days ago
- The process of finishing a genome and moving it f...new scripts for working with multiple maps, contig graphs and scaffolds. Augmen...shotgun assembly are typically linked together in a graph structure that can serve to g...
2538 days ago
