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• • Rahul Nayak@rahul

  

  Perl module http://perlmaven.com/how-to-create-a-perl-module-for-code-reuse #Perl #Module #Package

  3737 days ago

• • Jit@jit.aber

  

  MSA tools http://en.wikipedia.org/wiki/List_of_alignment_visualization_software , http://www.ebi.ac.uk/Tools/msa/ #MSA #Alignments

  3725 days ago

• • Jit@jit.aber

  

  perl -nle 'if (/^>/) { $sl = 0; print; next } next if ($sl >= 200); $_ = substr($_, 0, 200-$sl) if ($sl + length($_) > 200); $sl += length($_); print;' file.fa >new.fa #Perl #Extract #Fasta

  3637 days ago

• • Rahul Nayak@rahul

  

  perl -nle '$count += () = /XY[0-9]+/g; END {print $count}' inputfile #Count #Perl #Perloneliner

  3662 days ago

• • Jit@jit.aber

  

  Extract list of read ID from bam file: samtools view mbi.sorted.bam |perl -ne '/ID/ && print' > extractedID.sam #Extract #Ids #SAM #BAM #NGS

  3650 days ago

• • Jit@jit.aber

  

  FastaQ 2 Fasta Oneliner: paste - - - -< totalRNA_placental_1.fastq | perl -pale'$_="@F[0..1]"'|tr "\^@" "\>" | perl -pale 's/\s/\n/g' #Oneliner #NGS #FastaQ #Fasta

  3650 days ago

• • Jit@jit.aber

  

  Install Bioperl on ubuntu : sudo apt-get install bioperl #Bioperl #Install #Perl

  3645 days ago

• • Abhimanyu Singh@abhimanyu

  

  Perl scripts for Bioinformatics http://jura.wi.mit.edu/bio/bioinfo/scripts/ #Perl #Bioinformatics #Genetics #Scripts

  3644 days ago

• • Jit@jit.aber

  

  Remove N from a fasta file. Go to vi editor, type :%s/N\{25,\}//g and press enter. #Vim #vi #N #Replace #Fasta

  3637 days ago

• • Jit@jit.aber

  

  Remove the blank space from a fasta file. perl -nlwe 'tr/ //d; print if length' fileName #Delete #Space #Fasta #Perl #Oneliner

  3637 days ago

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