CBS Comparative Microbial Genomics group - BioTools download page
he CMG-biotools system presents a stand-alone interface for comparative microbial...16S rRNA phylogeny, basic DNA and codon statistics, proteome comparisons using BLAST and graphical analyses of DNA...2079 days ago
S-plot2: creates an interactive, two-dimensional heatmap of sequences
S-plot2 creates an interactive, two-dimensional heatmap capturing the similarities...tly compared. The tool includes functionality to extract, analyze, and automate BLAST queries of regions of interes...2043 days ago
S-plot2: Rapid Visual and Statistical Analysis of Genomic Sequences
S-plot2 creates an interactive, two-dimensional heatmap capturing the similarities...tly compared. The tool includes functionality to extract, analyze, and automate BLAST queries of regions of interes...2038 days ago
Synima: a Synteny imaging tool for annotated genome assemblies
Synima written in Perl, which uses the graphical features of R. Synima takes orthologues computed from reciprocal best BLAST hits or OrthoMCL, and DAGchai...2010 days ago
RepeatMasker compatible blast tool
RMBlast is a RepeatMasker compatible version of the standard NCBI blastn program. The primary differe...addition of a new program "rmblastn" for use with RepeatMasker a...ry features to the stock NCBI blastn program. These include: S...tps://anaconda.org/bioconda/rmblast1972 days ago
BLAST options, setting and defaults
...rch protein or DNA databases. BLAST...yield different results from BLAST, and may be useful for motif...w of BLAST, see the NCBI BLAST Course. Additional informatio...ASTNBLASTPBLASTXTBLASTNTBLASTXPSIBLAST Gap opening penalty:cos...penalty for a mismatch in the blast portion of run [integer] def...1969 days ago
genoPlotR - plot gene and genome maps project!
genoPlotR is a R package to produce reproducible, publi...d from usual format such as protein table files and blast results, as well as home-made...example) Reads from common formats: Genbank, EMBL, blast, Mauve, and from user-generat...1967 days ago
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TwinBLAST: When Two Is Better than One
TwinBLAST is a web-based tool for viewing 2 BLAST reports simultaneouslyside-by-side. It uses...ioPerl (www.bioperl.org) is used to indexraw BLAST reports and Bio::Graphics is used to draw pictograms of the BLASThits. https://github.com/IGS/...1698 days ago