A Brief Bioinformatics Tutorial
This is about how to use a computer to find what is known about a gene of interest...you will see how to look efficiently for a particular protein sequence, how to blast it against the database of yo...3637 days ago
YASS :: genomic similarity search tool
YASS is a genomic similarity search tool, for nucleic (DNA/RNA) sequences in f...of the heuristic pairwise local alignment tools for DNA sequences (FASTA, BLAST, PATTERNHUNTER, BLASTZ/LASTZ, LAST ...), YASS uses...2925 days ago
Kraken: ultrafast metagenomic sequence classification using exact alignments
Kraken is an ultrafast and highly accurate program for...s classification accuracy comparable to the fastest BLAST program. In its fastest mode,...million reads per minute, 909 times faster than Megablast and 11 times faster than the...2869 days ago
2869 days ago
Bioinformatics tools and software
USEARCH >Extreme high-throughput sequence analysis. Orders of magnitude faster than BLAST. MUSCLE >Multiple seq...2861 days ago
2842 days ago
GeneValidator - Identify problems with predicted genes
GeneValidator helps in identifing problems with gene predictions and provide useful information extracted from analysing orthologs in BLAST databases. The results produc...2810 days ago
BLAST Ring Image Generator (BRIG)
BRIG is a free cross-platform (Windows/Mac/Unix) application that can display circu...erence sequence and other sequences as concentric rings. BRIG will perform all BLAST comparisons and file parsing...2774 days ago
2764 days ago
Standardized velvet assembly report
Requirements: velvet (velveth velvetg should be in y...2","proto","xtable")) Perl Optional: BLAT or BLAST (to generate alignments again...faToTwoBit,gfClient,gfServer to your PATH. If using BLAST, add blastall and formatdb....2705 days ago