Results for "Pacific"
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Scaffolding of a bacterial genome using MinION nanopore sequencing
...several generated contigs cannot be easily resolved. A new generation of sequencers offering substantially longer reads is emerging, notably the Pacific Biosciences (PacBio) RS II sy...3228 days ago
- ...(aka Sanger sequencing) 454 pyro-sequencing (GS20, FLX or Titanium) Ion Torrent Solexa (Illumina) sequencing (in development) Pacific Biosciences sequencing...
2955 days ago
- ...smaragdinae finished genome, which were all independently validated by Pacific Biosciences sequencing. At th...training set from a GC-rich Rhodobacter sphaeroides genome. Using real Pacific Biosciences data, ALE identif...
2935 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
...SAIK can align reads generated by all the major sequencing technologies, including Illumina, Applied Biosystems SOLiD, Roche 454, Ion Torrent and Pacific BioSciences SMRT. Indeed, MOS...2910 days ago
- LoRMA is a tool for correcting sequencing errors in long reads such those produced by Pacific Biosciences sequencing machines. Publication: L. Salmela, R. Walve, E. Rivals, and E....
2170 days ago
LRCstats: Long Read Correction Statistics
...benchmarking DNA long read correction algorithms for long reads outputted by third generation sequencing technology such as machines produced by Pacific Biosciences. The reads produc...2316 days ago
SimLoRD: A read simulator for third generation sequencing reads
SimLoRD is a read simulator for third generation sequencing reads and is currently focused on the Pacific Biosciences SMRT error model. Reads are simulated from both strands of a pro...2087 days ago
LRCstats: a tool for evaluating long reads correction methods
...benchmarking DNA long read correction algorithms for long reads outputted by third generation sequencing technology such as machines produced by Pacific Biosciences. The reads produc...2087 days ago
Genome assembly tutorial "Genome Assembly for short and long reads"
...How to perform basic quality checks on the input data How to run a short read assembler on Illumina data How to run a long read assembler on Pacific Biosciences or Oxford Nanopor...1936 days ago
jackalope: A swift, versatile phylogenomic and high-throughput sequencing simulator
...variants from reference genomes and (ii) reads from both Illumina and Pacific Biosciences (PacBio) platform...single, paired-end, or mate-pair Illumina reads, as well as reads from Pacific Biosciences These simulations...1749 days ago
