List of visualization tools for genome alignments
...nce features, next-generation sequencing (NGS) data and the res...quences derived from multiple sequencing technologies. Low- or...ignments of huge-scale single-end and pair-end short reads http://omictools.com/ma...quences in an entire Illumina sequencing run http://www.sourceforge.n...2298 days ago
Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals
The purpose of this cheat sheet is to introduce biologist and bioinformatician to the frequently used tools for...sp;— move cursor to beginning of line ctrl+f — move cursor to end of lin...2294 days ago
Awk for Bioinformatician and computational biologist
Awk is a programming language which allows easy manipulation of structu...ified by the keyword called BEGIN and END. The syntax is as follows:...e}{Actions for everyline in the file} END { Actions after reading the f...IABLE_NAME) command: $ awk '{i[$1]=1}END{for (j...2293 days ago
Computational resources for TE discovery and TE detection
Transposable Elements (TEs) to genome structure and evolution as well as their impact on genome sequencing, assembly, annotation and ali...2288 days ago
Webinar on RNA-Seq Data Analysis on 28 Feb 2018
Strand NGS is a biologist friendly NGS analysis tool that allows biologists to...ch automates analysis and leaves more time for end data interpretation. This web...perience in molecular biology, next-generation sequencing based testing, clinical genom...2278 days ago
Some useful Bioinformatics links
Reference-free prediction of rearrangem...he European eel genome from nanopore sequencing reads | Scientific Reports h...st and sensitive mapping of nanopore sequencing reads with GraphMap | Nature...ssembled de novo using only nanopore sequencing data | Nature Methods https:...2255 days ago
2231 days ago
Tools to Predict the Impact of Missense Variants !
Prioritizing missense variants for fur...n is a key challenge in current sequencing studies for exploring complex and Mendelian diseases. A large number...ssessor, Combined Annotation Dependent Depletion, LRT, phyloP, an...riantsh Combined Annotation Dependent Depletion (CADD)“CADD is a...2217 days ago
Gap filling or Contigs extensions tools !
...0. 2. Repeat: a. Identify paired-end reads (not in C) for which one or both ends align within, or extending,...subclone these clones into a paired-end sequencing vector, and generate paired-e...d (2) again, adding these new sequencing reads to what you had before....2179 days ago
Frequent Paired-end reads (PE 2x100) mapping command lines
bowtie2 -x hs37m -X 650 -q -1 r1.fq -2 r2.fq -S r12.bowtie2.sam bwa aln hs37m.fa r1.fq > r1.sai && bwa aln hs37m.fa r2.fq > r2.sai \ &&...2196 days ago