Results for "Pangolin"
Blogs
Illumina based assembly pipeline steps !
...CFTools, BEDTools; default for metagenomics data) Variant annotation (SnpEff, SnpSift) Consensus assessment report (QUAST) Lineage analysis (Pangolin) Clade assignment, mutation...929 days ago
Bookmarks
- This is a tutorial for using the Pangolin Web Application. For information on using the command line tool, please visit the command line tool usage page. https://cov-lineages.org/resources/pangolin/tutorial.html
929 days ago
Bio-Scripts
- $ pangolin --update #Major update conda activate pangolin git pull conda env update -f environment.yml pip install . re-installs pangolin.
954 days ago
Run Pango on your multifasta file !
...://cov-lineages.org/resources/pangolin/usage.html (base) [jnarayan@hn1 FASTA]$ conda activate pangolin (pangolin) [jnarayan@hn1 FAS.../home/jnarayan/anaconda3/envs/pangolin/lib/python3.8/site-packages/p.../home/jnarayan/anaconda3/envs/pangolin/lib/python3.8/site-packages/s...939 days ago
Tags
Palgoin installation return this warning ?
For Linux 64, Open MPI is built with CUDA awareness but this support is disabled by default.To enable it, please set the environment variable OMPI_MCA_opal_cuda_support=true beforelaunching your MPI processes. Equivalently, you can set the MCA parameter in the command line:mpiexec --mca opal_cu...Tags: Pangolin, Warning, Env, Conda
953 days ago
- This is a tutorial for using the Pangolin Web Application. For information on using the command line tool, please visit the command line tool usage page. https://cov-lineages.org/resources/pangolin/tutorial.html
Tags: pangolin, lineage, tutorial, learn
929 days ago
Comments
Comment on "Update Pangolin !"
$ pangolin --updatepangolin updated to v3.1.16pangoLEARN updated to 2021-11-04954 days ago
