Results for "Parallel"
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Public Databases for Bioinformatics !
...results can be reproduced /srv/www/$LABNAME/ web accessible from mitra.stanford.edu *NOT BACKED UP* Some parallel programming patterns: # gzip a bunch of files parallel gzip -- *.FILESTOGZIP # fo...1137 days ago
COSMOS, our workflow management system for NGS data
COSMOS, our Python-based management system for implementing large-scale parallel workflows focusing on, but not restricted to, large-scale short-read "NGS" sequencing data is open-acce...3572 days ago
- ...or a million. Process genomic data in batch by running principal component analysis or Hardy-Weinberg equilibrium, in minutes or hours, by using parallel computing frameworks like Map...
3486 days ago
RNA-Seq De novo Assembly Using Trinity
...ences in common). Chrysalis then partitions the full read set among these disjoint graphs. Butterfly then processes the individual graphs in parallel, tracing the paths that reads...2963 days ago
- Platanus is a novel de novo sequence assembler that can reconstruct genomic sequences of highly heterozygous diploids from massively parallel shotgun sequencing data. The latest versi...
2912 days ago
VirtualFlow: a versatile, parallel workflow platform for carrying out virtual screening
...igand Preparation VFVS : VirtualFlow for Virtual Screenings They use the same core technology regarding the workflow management and parallelization, and they can be used...1419 days ago
Many-Core Engine (MCE) for Perl example
...the line being the data and bank-tellers the parallel workers. MCE enhances that mo...spawning and shutdown. MCE::Loop Provides a parallel loop utilizing MCE for buildi...but allows for multiple code blocks to run in parallel with a slight change to synta...2649 days ago
CrocoBLAST: Optimized parallel implementation of local sequence alignment algorithms
Local sequence alignment is a cornerstone of bioinformatics, allowing to compare the amino-acid sequences of different proteins, or the nucleotide sequences of different...2474 days ago
Genomicus: genome browser that enables users to navigate in genomes in several dimensions
...oss different species, and chronologicaly along evolutionary time. Once a query gene has been entered, it is displayed in its genomic context in parallel to the genomic context of all...2357 days ago
PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
...ure, PLAST takes full advantage of recent multi-core personal computers without requiring any additional hardware devices. PLAST stands for Parallel Local Sequence Alignment Sear...2345 days ago
