2639 days ago
Many-Core Engine (MCE) for Perl example
MCE spawns a pool of workers and therefore does not fork a new process per...being the data and bank-tellers the parallel workers. MCE enhances that mo...and shutdown. MCE::Loop Provides a parallel loop utilizing MCE for buildi...s for multiple code blocks to run in parallel w...2665 days ago
NCBI Prokaryotic Genome Annotation Pipeline
NCBI Prokaryotic Genome Annotation Pipeline is designed to annotate bacterial and arch...veloped in 2005 has been replaced with an upgraded version that is capable of processing a larger data volume. You can...2560 days ago
CrocoBLAST: Optimized parallel implementation of local sequence alignment algorithms
Local sequence alignment is a cornerstone of bioinformatics, allowing to compare the amino-acid sequences of different proteins, or the nucleotide sequences of different...2490 days ago
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq dataAfterQ...s, bad reads and the QC results of each fastq file/pair.Currently it supports processing data from HiSeq 2000/2500/300...2379 days ago
Genomicus: genome browser that enables users to navigate in genomes in several dimensions
Genomicus is a genome browser that enables users to navigate in genomes in several dimensions: linearly along chromo...Once a query gene has been entered, it is displayed in its genomic context in parallel t...2373 days ago
PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
...out requiring any additional hardware devices. PLAST stands for Parallel Local Sequence Alignment Sear...to compare two sets of sequences (query vs. reference), Reduces the processing time of sequences comparisons...2361 days ago
HiC-Pro: an optimized and flexible pipeline for Hi-C data processing
HiC-Pro was designed to process Hi-C data, from raw fastq files (paired-end Illumina data) to the normalized contact maps. Since version 2.7.0, HiC-Pro supports the main...2356 days ago
Musket: a multistage k-mer spectrum based corrector
Musket is a well-established leading next-generation sequencing read error correction algorithm targetting Illu...Musket is multi-threaded using a master-slave model and demonstrates superior parallel s...2356 days ago
MUMmer4: A fast and versatile genome alignment system
...ts by changing the 32-bit suffix tree data structure at the core of MUMmer to a 48-bit suffix array, and that offers improved speed through parallel processing of input query sequences. Wit...2297 days ago