CISA: Contig Integrator for Sequence Assembly
...ed for the de novo assembly of genomes, however, no individual assembler guarantees the optimal assembly for diverse species. Optimizing various parameters in an assembler is often perf...2698 days ago
MeGAMerge: A tool to merge assembled contigs, long reads from metagenomic sequencing runs
...iles containing assembled contigs of any length in Multi-FASTA format to produce an improved contig set based on OLC based assembly. All overlap parameters (Minimum Overlap Length, Iden...2694 days ago
2694 days ago
FSA: Fast Statistical Alignment
...SA introduces several novel methods for constructing better alignments: FSA uses machine-learning techniques to estimate gap and substitution parameters on the fly for each set of in...2645 days ago
SeqMule: Automated human exome/genome variants detection
...pt consisting of more than 10 popular alignment, analysis tools and runs the script line by line. Users can change the pipeline or fine-tune the parameters by modifying its configuratio...2616 days ago
2593 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
...htmlFeatures Mapping position agnostic to alignment parameters. Consistent...t error profiles, rates and sequencing technologies even with default parameters. Circular g...2524 days ago
2338 days ago
ACANA: An accurate and consistent alignment tool for DNA sequences
...g for evolutionarily related regions of sequences in order to achieve the best alignment. ACANA is also robust to the small changes of alignment parameters, particularly the gap extensi...2342 days ago
2337 days ago