Efficient genome searching with Biostrings and the BSgenome data package
Tags: BioStrings, R, Search, Pattern, Genome, Chromosome, Bioinformatics
2986 days ago
Pattern Searching in a Single Genome
Pattern searching holds much importance for biologists , for the understanding of DNA ( and its functionality) can be more than a matter of satisfying curiosity , but also give answers to many issuess uchas medical conditions . However,there are a number of ways of searching with in a single chro...Tags: Bioinformatics, Genomics, Pattern, Chromosome, Study
2986 days ago
chromosight: Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps
Python package to detect chromatin loops (and other patterns) in Hi-C contact maps. Stable version with pip: pip3 install --user chromosight Stable version with conda: conda install -c bioconda -c conda-forge chromosight or, if you want to get the latest development version: pip3 in...Tags: chromosight, Computer, vision, program, pattern, recognition, chromosome, Hi-C, contact, maps
1509 days ago