Jit
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chromosight: Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps
By Jit 1704 days ago
https://github.com/koszullab/Chromosight
Python package to detect chromatin loops (and other patterns) in Hi-C contact maps.
Stable version with pip:
pip3 install --user chromosight
Stable version with conda:
conda install -c bioconda -c conda-forge chromosight
or, if you want to get the latest development version:
pip3 install --user -e git+https://github.com/koszullab/chromosight.git@master#egg=chromosight