BOL: chromosight: Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps

Bookmarks
Jit
chromosight: Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps

chromosight: Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps

By Jit 1735 days ago

Python package to detect chromatin loops (and other patterns) in Hi-C contact maps.

Stable version with pip:

pip3 install --user chromosight

Stable version with conda:

conda install -c bioconda -c conda-forge chromosight

or, if you want to get the latest development version:

pip3 install --user -e git+https://github.com/koszullab/chromosight.git@master#egg=chromosight