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Results for "Pattern"

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• • Rahul Agarwal@raag

  

  Suffix Trees ! http://www.cs.cmu.edu/~ckingsf/bioinfo-lectures/suffixtrees.pdf #SuffixTree #Pattern

  Tags: SuffixTree, Pattern

  3617 days ago

• • John Parker@parker

  

  Search a PATTERN in a file and print the line. perl -ne '/PATTERN/ && print' fileName #Perl #Pattern #Print #Search #Line

  Tags: Perl, Pattern, Print, Search, Line

  3517 days ago

• • Jit@jit.aber

  

  Find a pattern in first 7 characters of reads. bioawk -c fastx 'substr($seq,0,7) == $TAG { print }' reads.fq.gz #Reads #NGS #Extract #Pattern

  Tags: Reads, NGS, Extract, Pattern

  2504 days ago

• • Jit@jit.aber

  

  Extract fasta with pattern $ perl -n -e '$on=(/^>(A)/) if (/^>/); print $_ if ($on);' pilonCor_round1.fasta > A_set.fa #Pattern #Extract #Fasta

  Tags: Pattern, Extract, Fasta

  1913 days ago

• • Jit@jit.aber

  

  Print all the values beetween a pattern "abc" > awk '/abc/{flag=1;next}/mno/{flag=0}flag' file #awk #print #range #pattern

  Tags: awk, print, range, pattern

  3012 days ago

• • Jit@jit.aber

  

  Find matching file names with pattern in a directory. $ ls -dq *_name2search_* | wc -l #file #search #hits #pattern #names #directory

  Tags: file, search, hits, pattern, names, directory

  2240 days ago

• • Rahul Nayak@rahul

  

  #Extract all the files from a #directory and #sub-dir with #pattern. $ find TrimmedDir -type f | grep "L_" | xargs -i cp {} .

  Tags: Extract, directory, sub, pattern

  2233 days ago