TRRUST v2: an expanded reference database of human and mouse transcriptional regulatory interactions
TRRUST contains 8,444 and 6,552 TF-target regulatory relationships of 800 human TFs and 828...de of regulation. Search at : http://www.grnpedia.org/trrust/Network_search_form.php2339 days ago
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SEX-DETector: A Probabilistic Approach to Study Sex Chromosomes in Non-Model Organisms
SEX-DETector is a probabilistic method that relies on RNAseq data from a cross (parents and progeny of each sex) to infer autosomal and sex-linked genes (genes located...2179 days ago
KOBAS: a web server for gene/protein functional annotation and functional gene set enrichment
KOBAS 3.0 is a web server for gene/protein functional annotation (Annotate module) and functional gene set enrichment(Enrichment module). For Annotate module, it a...2038 days ago
Genome sequence-based (sub-)species delineation.
The GGDC web service reports digital DDH for a universal and accurate delineation of proka...enomic G+C content. http://ggdc.dsmz.de/ggdc_background.php#...Genome Distance Calculator 2.1 http://ggdc.dsmz.de/ggdc.php &...1984 days ago
SiLiX: implements an ultra-efficient algorithm for the clustering of homologous sequences
The software package SiLiX implements an ultra-efficient algorithm for the clustering of homologous sequences, based on single transitive links (single linkage) wi...1984 days ago
Osprey: Network Visualization System
Osprey is a software platform for the visualization of complex biological interaction networks. Osprey builds data...d is a part of the BioGRID family of software. It utilizes both MySQL&...1945 days ago
Genome assembly forensics: finding the elusive mis-assembly
We present the first collection of tools aimed at automated genome assembly validation. This...cbi.nlm.nih.gov/pmc/articles/PMC2397507/ http://amos.sourceforge.net/wiki/index.php/AM...1938 days ago
Tadpole: an assembler, error-corrector, and read-extender
Tadpole is a kmer-based assembler, with additional capabilities of error-correcting and exte...d el=50 er=50 k=62 ecc=t More at http://seqanswers.com/forums/showthread.php?t=...1564 days ago