Run miniasm assembler on nanopore reads !
Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outpu...2343 days ago
Bioinformatics Web Application Development with Perl
Perl's second wave of adoption came from the growth of the world wide web. Dynamic web pages—the precursor...use it builds on the Perl DBI, it scales everywhere from SQLite to PostgreSQL, MySQL,...2334 days ago
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
BBSplit internally uses BBMap to map reads to multiple genomes at once, and determine which genome they match best. This is different than with ordinary mapping. If a g...2327 days ago
List of visualization tools for network biology
Network analysis is any structured technique used to mathematically analyze a circuit (...na3d.org Biana Data integration and network management http://sbi.imim.es/web/BIANA.php B...2301 days ago
Computational resources for TE discovery and TE detection
Transposable Elements (TEs) to genome structure and evolution as well as their impact on g...bsp; Censor http://www.girinst.org/censor/download.php&n...keraid/ mer-engine http://mer-engine.cshl.edu/mer-home.php...2286 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Horizontal gene transfer (HGT), the “non-sexual movement of genetic material between two organisms” , is relatively common in prokaryotes and single-ce...863 days ago
Python learning resources for bioinformatics and computational biologist !
Python is a general-purpose language, which means it can be used to build just about anything, which will be made easy with the right tools/libraries. Professionally,...2268 days ago
Some useful Bioinformatics links
Reference-free prediction of rearrangement breakpoint reads | Bioinformatics | Oxford Aca...y? - SEQanswers http://seqanswers.com/forums/showthread.php?t...9 Inroduction to dot-plots http://www.code10.info/index.php%3F...2254 days ago
Installing Bio::SCF perl module
Most Perl modules are written in Perl, some use XS (they are written in C) so...ourceforge.net). This can be downloaded from https://sourceforge.net/project/showfiles.php?gr...2231 days ago
Ligand Docking Tools and Software !
Ligand docking referred to cases where small molecule (“ligand”) is being docked into much larger macromolecule ("target"). The following is partial list of...2215 days ago