Results for "Plant"
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Tallymer is based on enhanced suffix arrays. This gives a much larger flexibility concerning the choice of the k-mer size. Tallymer can process large data sizes of several billion bases. We used it in a variety of applications to study the genomes of maize and other plant species. In particu...Tags: Tallymer, method, compute, K-mer, frequencies, application, annotate, large, repetitive, plant, genomes
2264 days ago
Phytozome v12.1: plant science community hub for accessing palnts genomic data
Phytozome, the Plant Comparative Genomics portal of the Department of Energy's Joint Genome Institute, provides JGI users and the broader plant science community a hub for accessing, visualizing and analyzing JGI-sequenced plant genomes, as well as selected genomes and datasets that have been seq...Tags: Phytozome, plant, science, community, hub, accessing, palnts, genomic, data, genome
1503 days ago
The Breeding API (BrAPI) project
The Breeding API (BrAPI) project is an effort to enable interoperability among plant breeding databases. BrAPI is a standardized RESTful web service API specification for communicating plant breeding data. This community driven standard is free to be used by anyone interested in plant breeding da...Tags: Breeding, API, BrAPI, project, plant, databases
1207 days ago
- Collection of Python libraries to parse bioinformatics files, or perform computation related to assembly, annotation, and comparative genomics.
Tags: MCscan, pipeline, synteny, plant, annotation, comparative genomics, jcvi
1085 days ago
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