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A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
PAGIT addresses the need for software to generate high quality draft genomes. It is based on a series of programs that we developed: ABACAS, that is able to contiguat...2555 days ago
- ...can be used to transfer annotations from one gene (or protein) to another. Hence, detecting orthology relations has become an important task in the post-genomic era. Various genomic...
2369 days ago
Taxoblast : Taxoblast is a pipeline to identify contamination in genomic sequence
...of foreign DNA sequences an important part of analysis pipelines. Here we use Taxoblast, a simple pipeline with a graphical user interface, for the post-assembly detection of contami...2360 days ago
3d-dna: 3D de novo assembly (3D DNA) pipeline
...ems, 2016) and Juicebox (Durand & Robinson et al., Cell Systems, 2016), as well as additional dependencies noted below. Feel free to post your questions and comments a...2325 days ago
- CrusView is a java based tool for karyotype/genome visualization and comparison of crucifer Species. It also integrates an binary version of KGBassembler and a post-modification step for its assembling result.
2220 days ago
- ...ore than 70 software and packages oriented towards NGS. In its current version, Genobuntu supports pre assembly tools, genome assemblers as well as post assembly tools. Commonly...
1977 days ago
plumber:An R package that converts your existing R code to a web API
...t;- rnorm(100) hist(rand) } #* Return the sum of two numbers #* @param a The first number to add #* @param b The second number to add #* @post /sum function(a, b){ as.n...1885 days ago
Google Colab : Google Colab is a free cloud service and now it supports free GPU!
...le notebook to submit, use the website https://google-colab.com/, it is really easy, on the top right corner click 'submit +'. The earlier you post the more visibility you will...1561 days ago
- this is a fourth blog post in the Machine learning in Perl series, focusing on the AI::MXNet, a Perl interface to Apache MXNet, a modern and powerful machine learning librar...
1545 days ago
Genobuntu: Package for Next Generation Sequencing and Genome Assembly
...ore than 70 software and packages oriented towards NGS. In its current version, Genobuntu supports pre assembly tools, genome assemblers as well as post assembly tools.Commonly used...1453 days ago
