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Download mutliple fasta file from NCBI in one GO!!
...k given that you already have a list of GIs or accession IDs . Alternatively, use one liner perl script: perl -ne 'if(/^>(\S+)/){$c=$i{$1}}$c?print:chomp;$i{$_}=1 if @ARGV' GIs....3912 days ago
Public Databases for Bioinformatics !
...unction x = random.random() time.sleep(x/10) print i, x ofp.write("%i\t...nd(pid) for pid in pids: os.waitpid(pid, 0) ofp.close() print "FINISHED" For use case 1 we...1141 days ago
Orione – a web-based framework for NGS analysis in microbiology
...N, Travaglione A, Uva P, Zanetti G, Fotia G. (2014) Orione, a web-based framework for NGS analysis in microbiology. Bioinformatics [Epub ahead of print]. [article]...3576 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
...q | gzip -1 > reads.paf.gz Then we can assemble miniasm -f reads.fq reads.paf.gz > reads.gfa Convert GFA to FASTA: awk '/^S/{print ">"$2"\n"$3}' reads.gfa |...2353 days ago
- Read one or more FASTQ files, fastqe will compute quality stats for each file and print those stats as emoji... for some reason. Given a fastq file in Illumina 1.8+/Sanger format, calculate the mean (rounded) score for each position and print a corresponding emoji! https://fastqe.com/
2101 days ago
SeqFu: A Suite of Utilities for the Robust and Reproducible Manipulation of Sequence Files
...iles. Includes functions to interleave and de-interleave FASTQ files, to rename sequences and to count and print statistics on seque...798 days ago
