Results for "Program"
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PAired-eND Assembler for DNA sequences
PANDASEQ is a program to align Illumina reads, optionally with PCR primers embedded in the sequence, and reconstruct an overlapping sequence. More at https://github.com/neufeld/pandaseq2949 days ago
- ...data against consensus sequences of other assemblies (a simple mapping). The MIRA acronym stands for Mimicking Intelligent Read Assembly and the program pretty well does what its acr...
2949 days ago
- This is the andi program for estimating the evolutionary distance between closely related genomes. These distances can be used to rapidly infer phylogenies for big sets of genom...
2912 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
Satsuma is a whole-genome synteny alignment program. It takes two genomes, computes alignments, and then keeps only the parts that are orthologous, i.e. following the conserved order...2912 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
MOSAIK is a stable, sensitive and open-source program for mapping second and third-generation sequencing reads to a reference genome. Uniquely among current mapping tools, MOSAIK can...2905 days ago
- ...sp;Reporting (GAEMR) package is an assembly analysis framework composed a number of integrated modules. These modules can be executed as a single program to generate a complete analys...
2880 days ago
Linux command line exercises for NGS data processing
...ina Amplicons Processing Workflow. In Linux, we use a shell that is a program that takes your commands from...lize Bourne Again SHell (bash), but there are several additional shell programs on a typical Linux system su...2872 days ago
Kraken: ultrafast metagenomic sequence classification using exact alignments
...an ultrafast and highly accurate program for assigning taxonomic label...tagenomic DNA sequences. Previous programs designed for this task have...o use faster abundance estimation programs, which only classify small s...ter than the abundance estimation program MetaPhlAn. Kraken is availabl...2867 days ago
- Kaiju is a program for the taxonomic classification of metagenomic high-throughput sequencing reads. Each read is directly assigned to a taxon within the NCBI taxonomy by com...
2867 days ago
- CrossMap is a program for convenient conversion of genome coordinates (or annotation files) betw...liftover genome coordinates between assemblies. It’s not a program for aligning sequences to ref...
2797 days ago
