Results for "Program Officer"
Bookmarks
PAired-eND Assembler for DNA sequences
PANDASEQ is a program to align Illumina reads, optionally with PCR primers embedded in the sequence, and reconstruct an overlapping sequence. More at https://github.com/neufeld/pandaseq2966 days ago
- MIRA is a multi-pass DNA sequence data assembler/mapper for whole genome and EST/RNASeq projects. MIRA assembles/map...ing). The MIRA acronym stands for Mimicking Intelligent Read Assembly and the program...
2966 days ago
- This is the andi program for estimating the evolutionary distance between closely related genomes. These distances can be used to rapidly infer phylogenies for big sets...
2929 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
Satsuma is a whole-genome synteny alignment program. It takes two genomes, computes alignments, and then keeps only the parts that are orthologous, i.e. following the conserve...2929 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
MOSAIK is a stable, sensitive and open-source program for mapping second and third-generation sequencing reads to a reference genome. Uniquely among current mapping tools, MOSA...2921 days ago
- The Genome Assembly Evaluation Metrics and Reporting (GAEMR) package is an assembly analysi...osed a number of integrated modules. These modules can be executed as a single program...
2897 days ago
Linux command line exercises for NGS data processing
The purpose of this tutorial is to introduce students to the frequently used tools for N...sing Workflow. In Linux, we use a shell that is a program that takes your commands from...ell (bash), but there are several additional shell program...2889 days ago
Kraken: ultrafast metagenomic sequence classification using exact alignments
Kraken is an ultrafast and highly accurate program for assigning taxonomic labels to metagenomic DNA sequences. Previous programs designed for this task have...to use faster abundance estimation programs, which only classify small s...aster than the abundance estimation program...2884 days ago
- Kaiju is a program for the taxonomic classification of metagenomic high-throughput sequencing reads. Each read is directly assigned to a taxon within the NCBI taxonomy...
2884 days ago
- CrossMap is a program for convenient conversion of genome coordinates (or annotation files) between different...to liftover genome coordinates between assemblies. It’s not a program...
2814 days ago
