Results for "Progressive Cactus"

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  • Progressive Cactus

    ...Hickey (hickey@soe.ucsc.edu) Progressive Cactus is a whole-genome alignment packag...Instructions IMPORTANT NOTE: Progressive Cactus does not presently support install...t directory of where you want Progressive Cactus installed: git clone git://g...

    2666 days ago

  • progressiveCactus

    Progressive Cactus is a whole-genome alignment package. Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules https://github.com/glennhickey/progressiveCactus

    2545 days ago

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  • CYNTENATOR: Progressive Gene Order Alignment of 17 Vertebrate Genomes http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0008861#pone-0008861-g003 #Alignment #CYNTENATOR #Genome

    3520 days ago

  • Progressive alignment with Cactus: a multiple-genome aligner for the thousand-genome era https://www.biorxiv.org/content/biorxiv/early/2019/08/09/730531.full.pdf #Alignment #Cactus

    1729 days ago

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Bio-Scripts

  • Setting up autoConTAMPR !

    (base) jit@jit-HP-Pro-3335-MT:~/Downloads/testDock$ docker build -t autocontampr . Sending build context to Docker daemon 9.024MB Step 1/16 : FROM ubuntu:14.04 ---...

    1443 days ago

  • Install prokka using conda !

    (JitMetaENV) ➜ assembly conda install -c bioconda prokka Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen so...

    1216 days ago

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  • Progressive Cactus

    v0.0 by Glenn Hickey (hickey@soe.ucsc.edu) Progressive Cactus is a whole-genome alignment package. Requirements git gcc 4.2 or newer python 2.7 wget 64bit processor and build environment 150GB+ of memory on at least one machine when aligning mammal-sized genomes; less memory is needed f...

    Tags: Bioinformatics, Analysis, Progressive Cactus, Genome

    2666 days ago