Results for "Public"
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Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
...of the organism, as it learns all the properties it needs to on its own. Open Source: Prodigal source code is freely available under the General Public License. Download...2698 days ago
CABOG: Celera Assembler with Best Overlap Graph
...software that was originally developed at Celera for the 2001 publication of the first draft human genome sequence. The software was released to the public domain in 2004. Its open sour...2561 days ago
dbCAN: a web server and DataBase for automated Carbohydrate-active enzyme ANnotation
...mily classification of the existing CAZyme families based on sequence similarities; dbCAN make all pre-computed data freely available to the public, including sequence alignment...2547 days ago
GeneProf: analysis of high-throughput sequencing experiment
...s can be easily accessed and compared and the analysis procedures employed to produce the data are fully transparent (cp. Tutorial 'Examining Public Next-Gen Data..'). Extensibi...2510 days ago
- ...mats and an optional style specification file to generate customizable, publication quality genome maps in b...nd-line interface for incorporation in genome analysis pipelines, and a public Application Programming Inter...
2501 days ago
DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication
We developed a prokaryotic genome annotation pipeline, DFAST, that also supports genome submission to public sequence databases. DFAST was originally started as an on-line annotation...2378 days ago
Taxoblast : Taxoblast is a pipeline to identify contamination in genomic sequence
...mbination with manual curation, may thus constitute a useful complement to standard bioinformatics analyses prior to submission of genomic data to public repositories. Our analysis pi...2369 days ago
AIRVF: a filtering toolbox for precise variant calling in Ion Torrent sequencing
...ant calls. Tests on sequencing data of standard reference material showed up to ∼98% reduction of false variants when combined to conventional public pipelines and ∼48% to the...2340 days ago
- ...loping it, and backward-incompatible interface changes can and will arise. To avoid these types of changes being a surprise to our users, our public APIs are decorated to make it...
2270 days ago
- ...ported. How to use TAREAN: Install a local instance of the pipeline using its source code available from bitbucket repository. Use public Galaxy-based server at h...
2196 days ago
