Results for "R"
Bookmarks
...lo - same species annotations lift over pipeline Lift over is the process of transferring annotations from one genome assembly to anot...is a new, improved genome assembly for the species and good quality...with the old one (e.g., with BLAT), process the alignment data to de...3016 days ago
- NCBI Remap. This tool is conceptually similar to liftOver in that in manages conversions between a pair of genome assemblies but it uses different methods to achieve these m...imple web interface or you can use the API for NCBI Remap. More at http://w...
3015 days ago
- Although centromeres are essential for life and are the subject of extensive research, centromere locations...metagenomic samples, and inference of centromere locations....budding yeast and a human malaria parasite. We then use two m...lm.nih.gov/pubmed/25940625 More at http://cbio.ensmp.fr/cent...
3014 days ago
- ...ata analysis tool HiCdat is easy-to-use and provides solutions starting from aligned reads up to...ntly, HiCdat is focussed on the analysis of larger structural features of chr...tput formats and can therefore easily be integrated into existing workflows o...
3014 days ago
UCSC Genome Browser and Blat software !
This directory contains Genome Browser and Blat application binaries built for standalone command-line use on various supported Linux and UNIX platforms....he command line to display your machine type. In most cases t...formatics (http://www.kentinformatics.com). More at http://h...3008 days ago
- This tutorial assumes no previous knowledge of scripting or programming, yet progresses rapidly toward an intermediate/advanced...ile sneaking in little nuggets of UNIX® wisdom and lore. It serves...avily-commented examples invite active reader participation, under the...
3008 days ago
- This is a collection of libraries and high-quality end-user scripts for bioinformatic analys...e annotation, collecting data scores from a variety of modern fi...libraries provide a unified, abstracted interface to multiple co...Bio::ToolBox package includes scripts for setting up databases...
3007 days ago
- Generic Genome Browser Version 2: A Tutorial for Administrators This is an extensive tutorial to take you through the main features and gotchas o...that you have successfully set up Perl, GD, BioPerl and the other G...a genome size database using the berkeleydb and MySQL adaptors. M...
3007 days ago
- Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to wor...conducting population genomics and phylogeography. More at http://catchenl...
3002 days ago
