Results for "R"
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PhyloGrapher - Graph Visualization Tool
PhyloGrapher is a program designed to visualize and study evolutionary relationships within families of homologous genes or proteins (elements).PhyloGrapher is a drawin...custom graphs for a given set of elements. In general, it is possible to use ...2963 days ago
PAired-eND Assembler for DNA sequences
PANDASEQ is a program to align Illumina reads, optionally with PCR primers embedded in the sequence, and reconstruct an overlapping sequence. More at https://github.com/neufeld/pandaseq2964 days ago
- MIRA is a multi-pass DNA sequence data assembler/mapper for whole genome and EST/RNAS...4 pyro-sequencing (GS20, FLX or Titanium) Ion Torrent...sequencing technologies either in a single assembly run (a t...hat I've used and developed during the past 14 years to get a...
2964 days ago
RACA: Reference-Assisted Chromosome Assembly
Rreference-Assisted Chromosome Assembly (RACA), an algorithm to reliably order and orient sequence scaffolds generated by NGS and assemblers into longer chromosomal fragments using c...http://bioen-compbio.bioen.illinois.edu/RACA/...2964 days ago
PEAR: a fast and accurate Illumina Paired-End reAd mergeR
PEAR is an ultrafast, memory-efficient and highly accurate pair-end read merger. It is fully parallelized and can run with as low as just a few kilob...red-end read overlaps and without requiring the target fragment s...in a couple of minutes on a standard desktop computer. More at&n...2964 days ago
QUAST: quality assessment tool for genome assemblies
QUAST evaluates genome assemblies. For metagenomes, please see MetaQUAST project.It can works both with and without a given reference genome.The tool accepts multiple a... http://bioinf.spbau.ru/quast http://bioinformatics.oxfordjournals.org/cont...2964 days ago
REAPR: a universal tool for genome assembly evaluation
REAPR is a tool that evaluates the accuracy of a genome assembly using mapped paired end reads, without the use of a reference genome for comparison. It can be used in...other errors in an assembly for manual inspection. It reports...pping information such as the fragment coverage and insert siz...2964 days ago
- ...eɪlz/, a.k.a. boosting Sequence Compression Algorithms using Locally ConsistentEncoding) is a tool for compressing FASTQ files. It i...but supports any valid FASTQ with consistent read lengths. More at&nb...
2955 days ago
- Understanding Following table and graphs Duplication level kmer profile per base GC content per base N content per base quality per base sequence content per sequen...content per sequence quality sequence length distribution More at http://www....
2955 days ago
Trimmomatic: A flexible read trimming tool for Illumina NGS data
Paired End: java -jar trimmomatic-0.35.jar PE -phred33 input_forward.fq.gz input_reverse.fq.gz output_forward_pa...forward_unpaired.fq.gz output_reverse_paired.fq.gz output_rev...ill perform the following: Remove adapters (ILLUMINACLIP:T...low 15 (SLIDINGWINDOW:4:15) Drop reads below the 36 bases lo...2955 days ago
