Results for "R"
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chromoMap-An R package for Interactive Visualization and Annotation of Chromosomes
chromoMap provides interactive, configurable and elegant graphics visualization of chromosomes or chromosomal regions allowing users to map chromosome elements (like genes,SNPs etc.) on the chromosome plot.Each chromosome is composed of loci(representing a specific range determined based on ...Tags: chromoMap, R, Interactive, Visualization, Annotation, Chromosomes
1695 days ago
Retrieving Taxonomic Information with R
This vignette will introduce users to the retrieval of taxonomic information with myTAI. The taxonomy() function implemented in myTAI relies on the powerful package taxize. Nevertheless, taxonomic information retrieval has been customized for the myTAI stan...Tags: Retrieving, Taxonomic, Information, R, myTAI
1705 days ago
- ggradar allows you to build radar charts with ggplot2. This package is based on Paul Williamson’s code, with new aesthetics and compatibility with ggplot2 2.0. It was inspired by d3radaR, an htmlwidget built by timelyportfolio.
Tags: radar, charts, ggplot2, R
1685 days ago
- Alluvial diagram is a variant of a Parallel Coordinates Plot (PCP) but for categorical variables. Variables are assigned to vertical axes that are parallel. Values are represented with blocks on each axis. Observations are represented with alluvia (sing. “alluvium”) spanning...
Tags: alluvial, diagram, R, Flow
1681 days ago
- dockr 0.8.6 is now available on CRAN. dockr is a minimal toolkit to build a lightweight Docker container image for your R package, in which the package itself is available. The Docker image seeks to mirror your R session as close as possible with respect to R specific dependencies. Both dependenc...
Tags: dockr, R, CRAN, toolkit, build, lightweight, Docker
1588 days ago
- Trelliscope provides a way to flexibly visualize large, complex data in great detail from within the R statistical programming environment. Trelliscope is a component in the DeltaRho environment. For those familiar with Trellis Display, faceting in ggplot, or the notion of&nb...
Tags: Trelliscope, lexibly, visualize, large, complex, data, detail, R, statistical, programming, environment
1559 days ago
EFS: an ensemble feature selection tool implemented as R-package and web-application
The software EFS (Ensemble Feature Selection) makes use of multiple feature selection methods and combines their normalized outputs to a quantitative ensemble importance. Currently, eight different feature selection methods have been integrated in EFS, which can be used separately or combined in ...Tags: EFS, ensemble, feature, selection, tool, implemented, R-package, web, application, R
1552 days ago
PANEV: an R package for a pathway-based network visualization
PANEV (PAthway NEtwork Visualizer) is an R package set for gene/pathway-based network visualization. Based on information available on KEGG, it visualizes genes within a network of multiple levels (from 1 to n) of interconnected upstream and downstream pathways. The network graph visualizati...Tags: PANEV, R, package, pathway, network, visualization
1540 days ago
Instructions for Creating Your Own R Package
The following is a step-by-step guide to creating your own R package. Even beyond this course, youmay find this useful for storing functions you create for your own research or for editing existingR packages to suit your needs. This guide contains three different sets of instructions. ...Tags: Instructions, Create, Own, R, Package
1531 days ago
- RAINBOWR(Reliable Association INference By Optimizing Weights with R) is a package to perform several types of GWAS as follows. Single-SNP GWAS with RGWAS.normal function SNP-set (or gene set) GWAS with RGWAS.multisnp function (which tests multiple SNPs at the same time) Check epistatic (SNP...
Tags: RAINBOWR, Reliable, Association, INference, R, SNP, GWAS
1521 days ago
