Results for "RNA structure"
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Genome STRiP (Genome STRucture In Populations) is a suite of tools for discovering and genotyping structural variations using sequencing data. The methods are designed to detect...2810 days ago
- KisSplice is a software that enables to analyse RNA-seq data with or without a reference genome. It is an exact local transcriptome assembler that allows to identify SNPs, indels and alternative s...
2831 days ago
Method in Comparative genomics !!
We present methods for the automatic determination of genome correspondence. The a...e count by 500 genes (10% of previously annotated genes) and refining the gene structure of hundreds of genes. We pres...2745 days ago
- Gene finding in eukaryotic genomes is notoriously difficult to automate. The task is...Mark-ET is a gene prediction tool that incorporates RNA-Seq data into unsupervised tr...uires supervised training and uses information from RNA-Seq r...
1962 days ago
- ...llows you to make arc diagrams of RNA secondary structures, allowing for easy comparison and overlap of two structures, rank and display base...ts and co-variation information.R4RNA is the R package powering R-ch...ures and scripting. http://www.e-rna.org/r-chie/plot.cgi?eg=single
2814 days ago
- Fermi is a de novo assembler with a particular focus on assembling Illumina s...-consensus paradigm and uses the FM-DNA-index (FMD-index) as the key data structure. It is inspired by the string...
2807 days ago
- The MIRO (the miRNA omics) pipeline is a flexible and powerful tool for the analysis of miRNA (or more generall short RNA) expression using short-read deep sequencing data. In it...e of four different mappers, create differential gene (miRNA) expr...
2781 days ago
Entrez Direct: E-utilities on the UNIX Command Line
Entrez Direct (EDirect) is an advanced method for acce...f interconnected databases (publication, sequence, structure, gene, variation, expression,...nt summaries or other results that are returned in structured XML format. This can elimina...2767 days ago
- ART is a set of simulation tools to generate synthetic next-generation sequencing...sequencing data analysis, including read alignment, de novo assembly, SNP and structure variation discovery. ART was...
2752 days ago
- HybPiper was designed for targeted sequence capture, in which DNA sequencing libra...er, and some of the later scripts take advantage of this predictable directory structure.
2751 days ago
