Grinder / Biogrinder - A versatile omics shotgun and amplicon sequencing read simulator
Grinder is a versatile program to create random shotgun and amplicon sequence libraries based on DNA, RNA or proteic reference sequence...Grinder may also be used to help decide between alternative s...2550 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://...nbsp; Transcriptome mapping through internal construction of a transcript...lopment of a new spliced-alignment mode for mapping RNA-seq r...2536 days ago
eQuant : energy-based quality assessment of protein
Protein structures are of varying quality. Especially, in-silico modeled structures are prone to contain serious...ness and reliability of these particular protein structures.eQuant is a service for stru...2518 days ago
2517 days ago
GeneProf: analysis of high-throughput sequencing experiment
GeneProf is a web-based, graphical software suite that allows users to a...high-throughput sequencing platforms (RNA-seq and ChIP-seq; "Next-Gener...nalysis of ChIP-seq and RNA-seq data in one place, p...and data from GeneProf may be used externally (c...2507 days ago
Genomicus: genome browser that enables users to navigate in genomes in several dimensions
Genomicus is a genome browser that enables users to navigate in genomes in several...enomes. Moreover, Genomicus stores and displays the predicted ancestral genome structure in all the ancestral species...2371 days ago
CHSMiner: a GUI tool to identify chromosomal homologous segments
Background The identification of chromosomal homologous segments (CHS) within a...ll be useful for both experimentalists and bioinformaticians interested in the structure and evolution of genomes. &n...2371 days ago
2361 days ago
phyloXML: XML for evolutionary biology and comparative genomics
phyloXML (example) is an XML language designed to describe phylogen...yloXML, extensibility as well as domain specific applications are ensured. The structure of phyloXML is described by&n...2361 days ago
Delta: a new Web-based 3D genome visualization and analysis platform
Delta is an integrative visualization and analysi...model which represents the plausible consensus 3D structure of the genome. Deltafeat...hances the integration of genome topology/physical structure with extensive genome annotat...2340 days ago