ChromHMM: Chromatin state discovery and characterization
ChromHMM is software for learning and characterizing chromatin states. ChromHMM can integrate multiple chromatin datasets such as ChIP-seq data of various histone modif...2566 days ago
2553 days ago
Grinder / Biogrinder - A versatile omics shotgun and amplicon sequencing read simulator
Grinder is a versatile program to create random shotgun and amplicon sequence libraries based on DNA, RNA or proteic reference sequences provided in a FASTA file. Gri...2531 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
...equiring error correction, for which a highly sensitive overlapper is required.Currently, development of a new spliced-alignment mode for mapping RNA-seq reads is under way.Descriptio...2517 days ago
2498 days ago
GeneProf: analysis of high-throughput sequencing experiment
...s to analyse data produced using high-throughput sequencing platforms (RNA-seq and ChIP-seq; "Next-Generatio...kflows'). Integrated Analysis:Analysis of ChIP-seq and RNA-seq data in one place, plus...2488 days ago
INC-Seq: accurate single molecule reads using nanopore sequencing
INC-Seq reads enabled accurate species-level classification, identification of species at 0.1 % abundance and robust quantification of relative abundances, providing a cheap and effective approach for pathogen detection and microbiome profiling on the MinION system.2344 days ago
2342 days ago
SVfinder: Tool for detecting genomic rearrangement form DNA-seq data
SVfinder provides genome-wide detection of structural variants from next generation paired-end sequencing reads.2326 days ago
2314 days ago