Results for "Ra"
Top-level pages
...4.0-21-generic linux-image-extra-4.4.0-116-generic linux-image-extra-4.4.0-21-generic linux-signed...er python-dateutil python-decorator python-glade2 python-gmpy...niverse amd64 ttf-bitstream-vera all 1.10-8 [352 kB]Get:47 htt...ected package ttf-bitstream-vera.Preparing to unpack .../ttf-b...2195 days ago
Creating conda environment for python2.7
....0 astroid babel TIP: Install all the programs that you want in this environment at the same time. Installing 1 program at a time can lead to depend...838bed_2 Proceed ([y]/n)? y Downloading and Extracting Packageswheel 0.31.0: ##...2194 days ago
Learning Python Programming - a bioinformatician perspective !
Python Programming is a general purpose programming language that is open source...its rich set of utilities and libraries for data processing and a...e help of python packages and programming. Python has a couple of...It lend itself well to being integrated with other, existing tools...2187 days ago
Frequent Paired-end reads (PE 2x100) mapping command lines
...2.bwa.sam bwa bwasw ../index/bwa/hs37m.fa r12.fq > r12.bwasw.sam gsnap -A sam -d hs37m r1.fq r2.fq > r12.gsnap.sam novoalign -r Random -o SAM -f r1.fq r2.fq -i...2186 days ago
Ancestral sequence reconstruction steps !
Ancestral sequence reconstruction ...of the synthesis of an ancestral gene and expressio...ties-nineties, led by the laboratory of Steven A. Benner,...p;Over the last decade, ancestral protein resurrection has dev... 4.5- Path-o-Gen (temporal structure of a tree input fi...2183 days ago
Gap filling or Contigs extensions tools !
.../www.baseclear.com/landingpages/basetools-a-wide-range-of-bioinformatics-solution...YSS Here there is a useful explanation of several tools. https://bioinforma...complete assembly of the region of interest, generate an STS for each end of each...2169 days ago
LINKS scaffolder bloomfilter setting !
...git:(master) ✗ g++ -c BloomFilter_wrap.cxx -I/home/urbe/anaconda3/l...-fPIC -Dbool=char -O3 BloomFilter_wrap.cxx:1892:30: fatal error: .....In file included from BloomFilter_wrap.cxx:1877:0: ../BloomFilter....orientation <- -> must be separated by ":" >template_na...2155 days ago
Understanding BLASTn output format 6 !
...quence lengthsseqid Subject Seq-idsallseqid All subject Seq-id(s), separated by a ';'sgi Subject...art of subject sequenceevalue Expect valuebitscore Bit scorescore Raw scorelength Alignment len...2143 days ago
Interview Puzzles for Bioinformatician !
...p Tech Interview. 2 Eggs and 100 Floor Classic Puzzle Five pirates and gold coin Puzzle Six pirates and Gold Coin puzzle Prob...eigths One Bulb with 3 Switches Find the minimum number of aircraft Burning ropes to measure t...2124 days ago
My commonly used commands in Bioinformatics
..., I've found it useful to use MUMmer to extract the specific changes that Racon makes, so I can evaluate t...-t 24 assembly.fasta long_reads.fastq.gz | racon -t 24 long_reads.fastq.gz...snps -C -T -r nucmer.delta This reports Racon's changes in a table. You...2115 days ago
