2686 days ago
2686 days ago
2686 days ago
2652 days ago
FinisherSC: a repeat-aware and scalable tool for upgrading de novo assembly using long reads
FinisherSC, a repeat-aware and scalable tool for upgrading de novo assembly using long reads. Experiments with real data suggest that FinisherSC can provide longer and higher quality contigs than existing tools while maintaining high concordance.2617 days ago
PBSuite: Software for Long-Read Sequencing Data from PacBio
...BJelly is a highly automated pipeline that aligns long sequencing reads (such as PacBio RS reads or long 454 reads in fasta fo...ation approaches designed to exploit the high mappability of long reads (i.e., greater than 10,000 bp...2617 days ago
YASRA: Reference based assembler
...embler) performs comparative assembly of short reads using a reference genome, whi...ially from the genome being sequenced. Mapping reads to reference genomes makes us...time and quality for 454 and Illumina sequence reads. YASRA uses LASTZ (http://bx...2615 days ago
2610 days ago
CONCOCT: Clustering cONtigs with COverage and ComposiTion
...or unsupervised binning of metagenomic contigs by using nucleotide composition, coverage data in multiple samples and linkage data from paired end reads. Warning! This software is t...2610 days ago
2609 days ago